Quick update:
I found an older post from Candy and saw how he put it under the right side of the seat.. under the rubber bandy deal. Works for me too..
If you see the red zip ties, I ended up taking out the battery and running the Rapid harness under the sub-frame crossbar and to the other side and up. I also shoved all of the extra accessory plugs (for the Rapid) out to just inside the rear right side cowl (or whatever you call it). The other red zip tie secures the small ground wire going back to the battery. There were no direct positive connections to the battery.
I did end up Oxguarding all connections and using Dielectric grease on the outside of them to seal out the weather where a connector wouldn't fit inside a rubber boot.
Yes! I got it to run yesterday after everything was connected. No problems there thank goodness.
I got everything buttoned up and ready this afternoon. My first impression is that you can barely tell when VTEC kicks in at all outside of the VTEC noise change. WOW.. Smooth.. very smooth!! Of course as I understand it the Rapid Bike Race Module wont fully have the bike tuned until I ride the Viffer about 200 miles. Wouldn't you know as soon as I get down the road it starts raining and it is freezing cold. I'll go back out next week as soon as possible to take it the 200 miles and report back some additional info.