Update:
Yes, I’ve done all the above tests, and the fault was low AC voltage output so as Grumm mentioned this would be 2 phases shorted together. This failure is not documented in the manual, and my 2nd stator which had this failure. Each lasted about 40k miles, so not bad.
I was confused a little by the manual because page 16-12 describes checking that each stator phase is not shorted to ground as an R/R test. Also was a little confused because the OEM R/R has a 4 pin output, but the MOSFET R/R has a 2 pin output. It has been 12 years since I’ve seen the OEM R/R, but I understand now they just doubled up the wires.
5th gen OEM stators are no longer available, so I purchased an inexpensive aftermarket stator on Ebay, Caltric, which includes a new gasket. I know sometimes aftermarket parts are lower quality than OEM, but the seller has a 97.6% positive rating. Put it on the bike last night and have 60VAC @ 5k rpm across all 3 phases. Didn’t have any problems removing the old gasket. I should solder the wires to the MOSFET R/R later today, finish assembly on the remainder of the bike, and if the weather cooperates, be riding this weekend. It is late in the season where I live.
Great information about the 6th gen stator and flywheel, I assume that OEM of those are still available. Maybe I’ll go ahead and purchase these as I’d like to keep the bike going for many more years. Here’s a trick could help remove the flywheel nut: remove a spark plug then place rope in that cylinder. That worked well when I torqued a crank pulley on a Toyota Camry.
And I replaced the auto reset breaker with a 30A fuse holder. Nice to learn that, always wondered what that was.
I don’t come here much, but this discussion group is an invaluable resource to keep these aging bikes going. I attempted to give a donation, but when I click the pay now button, it says “This organization can't accept donations right now “, perhaps because the total donations have exceeded the total goal. If so, I’ll set a reminder to make an early 2025 donation.